PangeoForge for DNA Sequence and Protein datasets

Data
1

I’m looking at the pangeo_forge_recipes and see support for xarray-zarr transformations only.

https://github.com/pangeo-forge/pangeo-forge-recipes/tree/master/pangeo_forge_recipes/recipes

I’m interested in moving dna sequences files (fasta, fastq, etc), and I think what I need is a null transformation, that is, just copy the files from source to storage without any transformation. does anyone have an example of that?

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Hi @lila and welcome!

That’s an important an simple workflow…that unfortunately is not supported yet! :upside_down_face:

Would be great to have an issue to track this need:

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sure … added feature request: documentation and simple example for writing recipe classes for other types of datasets · Issue #422 · pangeo-forge/pangeo-forge-recipes · GitHub

cheers

  • k
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